Publications

Journal Publications

2017

  • G Macintyre*, T Goranova*, A Piskorz, D Ennis, A Supernat, O Hofmann, M Eldridge, D De Silva, LA Lewsley, J Stobo, C Wilson, D Kay, RM Glasspool, M Lockley, E Brockbank, A Montes, A Walther, S Sundar, R Edmondson, GD Hall, A Clamp, C Gourley, M Hall, C Fotopoulou, H Gabra, S Freeman, L Moore, M Jimenez-Linan, J Paul, F Markowetz, IA McNeish, JD Brenton
    Copy-number signatures and mutational processes in ovarian carcinoma
    Submitted (preprint doi: https://doi.org/10.1101/174201)
  • M Cmero, C Soon Ong, K Yuan, J Schröder, K Mo, PCAWG-11 working group, N Corcoran, T Papenfuss, C Hovens, F Markowetz, G Macintyre
    SVclone: inferring structural variant cancer cell fraction
    Submitted (preprint doi: https://doi.org/10.1101/172486
  • M Gerstung, C Jolly, I Leshchiner, S C. Dentro, S Gonzalez, T J. Mitchell, Y Rubanova, P Anur, D Rosebrock, K Yu, M Tarabichi, A Deshwar, J Wintersinger, K Kleinheinz, I Vazquez-Garcia, K Haase, S Sengupta, G Macintyre, S Malikic, N Donmez, D G. Livitz, M Cmero, J Demeulemeester, S Schumacher, Y Fan, X Yao, J Lee, M Schlesner, P C. Boutros, D D. Bowtell, H Zhu, G Getz, M Imielinski, R Beroukhim, S. C Sahinalp, Y Ji, M Peifer, F Markowetz, V Mustonen, K Yuan, W Wang, Q D. Morris, P T. SpellmanD C. Wedge, P Van Loo, – PCAWG Evolution and Heterogeneity Working Group, – PCAWG network
    The evolutionary history of 2,658 cancers
    Submitted (preprint doi: https://doi.org/10.1101/161562)
  • T Goranova, D Ennis, AM Piskorz, Geoff Macintyre, LA Lewsley, J Stobo, C Wilson, D Kay, RM Glasspool, M Lockley, E Brockbank, A Montes, A Walther, S Sundar, R Edmondson, GD Hall, A Clamp, C Gourley, M Hall, C Fotopoulou, H Gabra, S Freeman, L Moore, M Jimenez-Linan, J Paul, JD Brenton, IA McNeish
    Safety and utility of image-guided research biopsies in relapsed high-grade serous ovarian carcinoma—experience of the BriTROC consortium
    British Journal of Cancer
  • Geoff Macintyre, Peter Van Loo, Niall M Corcoran, David C Wedge, Florian Markowetz, Christopher M Hovens
    How Subclonal Modeling Is Changing the Metastatic Paradigm
    Clinical Cancer Research

2016

2015

2014

2013

2012

2011

2010

2009

Conference proceedings

2011

2008

  • Geoff Macintyre, James Bailey, Daniel Gustafsson, Adam Kowalczyk, Alex Boussioutas and Izhak Haviv.
    Gene Ontology Assisted Exploratory Microarray Clustering and its Application to Cancer. 
    Third IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB), Lecture Notes in Computer Science. Springer Berlin/Heidelberg. (pp. 400-411).
  • Fan Shi, Geoff Macintyre, Chris Leckie, Izhak Haviv, Alex Boussioutas, Adam Kowalczyk. A Bi-ordering approach to Linking Gene Expression with Clinical Annotations in Cancer. 2008,
    Proceedings of the second International Workshop on Machine Learning in Systems Biology. (pp 95-103).

Patents

  • Geoff MACINTYRE, Adam KOWALCZYK, Izhak HAVIV, James BAILEY. METHOD AND SYSTEM FOR DETECTING REGULATORY SINGLE NUCLEOTIDE POLYMORPHISMS. WO/2011/127527.